If so, when do they happen? And what Metroid game are they referencing? Also, side games count.
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According to Bulbapedia, the answer is no. However there are many video games, songs, books, names, movies, and items that are referenced. I did not link, but you can check out the link from sumwun.
To be honest I can only name a few that doesn’t revolve around Pokemon theory
Moonstones- how a meteor stroke down on mount Moon and plenished moonstones and clefairy needing a moontone to evolve it
Meteor fall- Oviously it’s called meteor falls for a reason in hoenn
And I’m not sure if deoxy’s count but it was crashing towards earth before it’s turn into it’s form